Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC098850.1-201ENST00000419919 790 ntBASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 AC133552.6-201ENST00000613406 534 ntBASIC18.81■□□□□ 0.6
TRIM47Q96LD4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM47Q96LD4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AL133338.1-201ENST00000565695 1517 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC018695.7-201ENST00000624587 2492 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AL589987.1-201ENST00000453380 819 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC123567.1-201ENST00000548294 1261 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 MIR4538-201ENST00000581377 78 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AC004461.2-201ENST00000629517 803 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 HLA-A-202ENST00000376806 1854 ntBASIC18.8■□□□□ 0.6
TRIM47Q96LD4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM47Q96LD4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 FER1L4-210ENST00000615531 5998 ntBASIC18.79■□□□□ 0.6
TRIM47Q96LD4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM47Q96LD4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms