Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AC012441.1-201ENST00000446669 685 ntBASIC17.34■□□□□ 0.37
LRCH3Q96II8 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AC124067.4-201ENST00000519691 2379 ntBASIC17.34■□□□□ 0.37
LRCH3Q96II8 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 BRI3BPP1-201ENST00000594224 787 ntBASIC17.34■□□□□ 0.37
LRCH3Q96II8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AL353726.2-201ENST00000623259 884 ntBASIC17.34■□□□□ 0.37
LRCH3Q96II8 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRCH3Q96II8 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.34■□□□□ 0.37
LRCH3Q96II8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRCH3Q96II8 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRCH3Q96II8 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LRCH3Q96II8 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
LRCH3Q96II8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
LRCH3Q96II8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.33■□□□□ 0.37
LRCH3Q96II8 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRCH3Q96II8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
LRCH3Q96II8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRCH3Q96II8 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.33■□□□□ 0.37
LRCH3Q96II8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 AC134698.3-201ENST00000523880 214 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 MIR3907-201ENST00000579424 151 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 CLUHP6-201ENST00000580789 941 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 AC061975.2-201ENST00000581722 295 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 AC024267.1-201ENST00000582320 895 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 AL451050.2-201ENST00000606967 682 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 AP001094.4-201ENST00000579008 2176 ntBASIC17.33■□□□□ 0.36
LRCH3Q96II8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.33■□□□□ 0.36
LRCH3Q96II8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRCH3Q96II8 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 AL355312.1-201ENST00000407115 2176 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 KRT8P37-201ENST00000451609 1420 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms