Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TERF1P2-201ENST00000583350 1212 ntBASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 AC008622.2-201ENST00000617006 1229 ntBASIC9.99□□□□□ -0.81
LINC00643Q86TS7 AC106739.1-201ENST00000617035 715 ntBASIC9.99□□□□□ -0.81
LINC00643Q86TS7 BID-214ENST00000617586 542 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 AC006557.6-201ENST00000623071 864 ntBASIC9.99□□□□□ -0.81
LINC00643Q86TS7 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 PC-208ENST00000529047 1607 ntTSL 3 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ZBED1P1-201ENST00000502364 1930 ntBASIC9.99□□□□□ -0.81
LINC00643Q86TS7 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CIC-204ENST00000572681 8218 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC9.99□□□□□ -0.81
LINC00643Q86TS7 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TP73-207ENST00000378290 1831 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 PCDHA5-203ENST00000614258 4248 ntBASIC9.98□□□□□ -0.81
LINC00643Q86TS7 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 MAPK10-262ENST00000641051 5738 ntBASIC9.98□□□□□ -0.81
LINC00643Q86TS7 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms