Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC012640.2-201ENST00000561606 901 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC008735.5-201ENST00000623544 497 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC073592.4-201ENST00000623827 446 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AC116407.3-201ENST00000623905 1129 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 REXO1L8P-201ENST00000604378 1897 ntBASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PPP4R4Q6NUP7 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 AC138035.3-201ENST00000622706 2791 ntBASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 AC005593.1-201ENST00000624894 515 ntBASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PPP4R4Q6NUP7 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 SNX33P1-201ENST00000592116 1762 ntBASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AL512652.2-201ENST00000625156 1716 ntBASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 LINC00982-205ENST00000420957 435 ntBASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC098831.1-202ENST00000438821 336 ntBASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 AL589182.2-201ENST00000619332 1049 ntBASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PPP4R4Q6NUP7 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms