Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC106872.11-201ENST00000605838 421 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AGGF1P2-201ENST00000426656 2106 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 CNN2P10-201ENST00000443067 918 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC104306.2-201ENST00000451877 341 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 RNA5SP486-201ENST00000515961 83 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 RN7SL574P-201ENST00000581512 297 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AL022328.3-201ENST00000607943 679 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AL662890.1-201ENST00000396818 632 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 PFN1P12-201ENST00000455938 534 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 PPY2P-201ENST00000582808 702 ntBASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
VPS13DQ5THJ4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC005332.8-201ENST00000622750 2735 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 FLJ38576-201ENST00000623820 2459 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 EEF1DP1-201ENST00000585891 896 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC015967.2-201ENST00000624092 234 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC006435.4-201ENST00000625037 234 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AL356737.1-201ENST00000634391 234 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AL138799.1-201ENST00000448213 1675 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 SCARNA20.5-201ENST00000516991 142 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AC148477.4-201ENST00000613430 1793 ntBASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
VPS13DQ5THJ4 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms