Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC138035.3-201ENST00000622706 2791 ntBASIC15.6■□□□□ 0.09
FOXA1P55317 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 TMBIM7P-203ENST00000641617 1718 ntBASIC15.6■□□□□ 0.09
FOXA1P55317 FER1L4-210ENST00000615531 5998 ntBASIC15.6■□□□□ 0.09
FOXA1P55317 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.6■□□□□ 0.09
FOXA1P55317 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA1P55317 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
FOXA1P55317 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.6■□□□□ 0.09
FOXA1P55317 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
FOXA1P55317 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA1P55317 AC074386.1-202ENST00000463561 864 ntBASIC15.6■□□□□ 0.09
FOXA1P55317 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.6■□□□□ 0.09
FOXA1P55317 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA1P55317 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA1P55317 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.6■□□□□ 0.09
FOXA1P55317 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 AL161645.1-201ENST00000622716 1255 ntBASIC15.6■□□□□ 0.09
FOXA1P55317 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA1P55317 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA1P55317 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
FOXA1P55317 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
FOXA1P55317 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA1P55317 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA1P55317 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA1P55317 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 AL513477.1-201ENST00000602865 2407 ntBASIC15.59■□□□□ 0.09
FOXA1P55317 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA1P55317 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.59■□□□□ 0.09
FOXA1P55317 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.59■□□□□ 0.09
FOXA1P55317 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.59■□□□□ 0.09
FOXA1P55317 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA1P55317 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA1P55317 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
FOXA1P55317 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA1P55317 IL9RP2-201ENST00000423948 1312 ntBASIC15.59■□□□□ 0.09
FOXA1P55317 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA1P55317 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA1P55317 AC087481.3-201ENST00000602886 1894 ntBASIC15.59■□□□□ 0.09
FOXA1P55317 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.58■□□□□ 0.09
FOXA1P55317 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.58■□□□□ 0.09
FOXA1P55317 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA1P55317 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.58■□□□□ 0.09
FOXA1P55317 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA1P55317 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
FOXA1P55317 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.58■□□□□ 0.09
FOXA1P55317 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.58■□□□□ 0.09
FOXA1P55317 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
FOXA1P55317 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA1P55317 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.58■□□□□ 0.09
FOXA1P55317 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
FOXA1P55317 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
FOXA1P55317 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA1P55317 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
FOXA1P55317 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
FOXA1P55317 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms