Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.22□□□□□ -0.13
CX3CR1P49238 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.22□□□□□ -0.13
CX3CR1P49238 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.22□□□□□ -0.13
CX3CR1P49238 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CX3CR1P49238 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 HAUS4P1-201ENST00000406739 1145 ntBASIC14.22□□□□□ -0.13
CX3CR1P49238 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 AC074386.1-202ENST00000463561 864 ntBASIC14.22□□□□□ -0.13
CX3CR1P49238 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.22□□□□□ -0.13
CX3CR1P49238 PDPK2P-202ENST00000562415 1191 ntBASIC14.22□□□□□ -0.13
CX3CR1P49238 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.22□□□□□ -0.13
CX3CR1P49238 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.22□□□□□ -0.13
CX3CR1P49238 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CX3CR1P49238 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CX3CR1P49238 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CX3CR1P49238 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CX3CR1P49238 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 PMS2P7-201ENST00000506558 1336 ntBASIC14.21□□□□□ -0.13
CX3CR1P49238 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CX3CR1P49238 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.21□□□□□ -0.13
CX3CR1P49238 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.21□□□□□ -0.13
CX3CR1P49238 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 PRYP6-201ENST00000514804 343 ntBASIC14.21□□□□□ -0.13
CX3CR1P49238 RNA5SP416-201ENST00000516838 111 ntBASIC14.21□□□□□ -0.13
CX3CR1P49238 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.21□□□□□ -0.13
CX3CR1P49238 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.21□□□□□ -0.13
CX3CR1P49238 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 AL121894.2-201ENST00000602977 491 ntBASIC14.21□□□□□ -0.13
CX3CR1P49238 AL365330.1-201ENST00000607459 531 ntBASIC14.21□□□□□ -0.13
CX3CR1P49238 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.21□□□□□ -0.13
CX3CR1P49238 AC120114.3-201ENST00000611923 658 ntBASIC14.21□□□□□ -0.13
CX3CR1P49238 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CX3CR1P49238 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CX3CR1P49238 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CX3CR1P49238 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
CX3CR1P49238 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CX3CR1P49238 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CX3CR1P49238 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.2□□□□□ -0.14
CX3CR1P49238 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.2□□□□□ -0.14
CX3CR1P49238 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CX3CR1P49238 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms