Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.71■□□□□ 0.43
HTTP42858 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.71■□□□□ 0.43
HTTP42858 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HTTP42858 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HTTP42858 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HTTP42858 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.71■□□□□ 0.42
HTTP42858 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.7■□□□□ 0.42
HTTP42858 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.7■□□□□ 0.42
HTTP42858 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HTTP42858 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC17.7■□□□□ 0.42
HTTP42858 NPM1P43-201ENST00000558669 786 ntBASIC17.7■□□□□ 0.42
HTTP42858 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 AL136301.1-201ENST00000615830 422 ntBASIC17.7■□□□□ 0.42
HTTP42858 COX6A1P2-201ENST00000620597 330 ntBASIC17.7■□□□□ 0.42
HTTP42858 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.7■□□□□ 0.42
HTTP42858 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HTTP42858 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HTTP42858 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.7■□□□□ 0.42
HTTP42858 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.7■□□□□ 0.42
HTTP42858 RN7SL774P-201ENST00000577467 290 ntBASIC17.7■□□□□ 0.42
HTTP42858 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC17.7■□□□□ 0.42
HTTP42858 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.7■□□□□ 0.42
HTTP42858 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HTTP42858 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.7■□□□□ 0.42
HTTP42858 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 AC011676.5-201ENST00000624864 2660 ntBASIC17.7■□□□□ 0.42
HTTP42858 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 GGT3P-204ENST00000453783 1664 ntBASIC17.7■□□□□ 0.42
HTTP42858 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HTTP42858 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.7■□□□□ 0.42
HTTP42858 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.7■□□□□ 0.42
HTTP42858 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC17.7■□□□□ 0.42
HTTP42858 AC073413.1-201ENST00000603927 732 ntBASIC17.7■□□□□ 0.42
HTTP42858 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HTTP42858 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.69■□□□□ 0.42
HTTP42858 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HTTP42858 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HTTP42858 AC125604.1-201ENST00000496255 707 ntBASIC17.69■□□□□ 0.42
HTTP42858 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC17.69■□□□□ 0.42
HTTP42858 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HTTP42858 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 AC234782.1-201ENST00000451950 919 ntBASIC17.69■□□□□ 0.42
HTTP42858 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 GAPDHP40-201ENST00000505218 1006 ntBASIC17.69■□□□□ 0.42
HTTP42858 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC17.69■□□□□ 0.42
HTTP42858 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HTTP42858 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HTTP42858 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
HTTP42858 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
HTTP42858 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC17.68■□□□□ 0.42
HTTP42858 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 AC141586.1-203ENST00000567242 366 ntBASIC17.68■□□□□ 0.42
HTTP42858 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 AC148477.4-201ENST00000613430 1793 ntBASIC17.68■□□□□ 0.42
HTTP42858 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms