Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC26.36■■□□□ 1.81
CUX1P39880 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC26.36■■□□□ 1.81
CUX1P39880 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC26.36■■□□□ 1.81
CUX1P39880 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC26.36■■□□□ 1.81
CUX1P39880 AC005077.2-201ENST00000449786 690 ntBASIC26.36■■□□□ 1.81
CUX1P39880 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC26.36■■□□□ 1.81
CUX1P39880 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC26.36■■□□□ 1.81
CUX1P39880 AL451050.2-201ENST00000606967 682 ntBASIC26.36■■□□□ 1.81
CUX1P39880 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC26.36■■□□□ 1.81
CUX1P39880 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 AC148477.4-201ENST00000613430 1793 ntBASIC26.36■■□□□ 1.81
CUX1P39880 KRT8P19-201ENST00000551916 1455 ntBASIC26.36■■□□□ 1.81
CUX1P39880 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CUX1P39880 AL138799.1-201ENST00000448213 1675 ntBASIC26.35■■□□□ 1.81
CUX1P39880 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC26.35■■□□□ 1.81
CUX1P39880 CSH2-202ENST00000345366 598 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX1P39880 RAC2-202ENST00000401529 569 ntTSL 4 BASIC26.35■■□□□ 1.81
CUX1P39880 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
CUX1P39880 KLF2P2-201ENST00000416807 1039 ntBASIC26.35■■□□□ 1.81
CUX1P39880 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC26.35■■□□□ 1.81
CUX1P39880 PARP8-206ENST00000503665 572 ntTSL 4 BASIC26.35■■□□□ 1.81
CUX1P39880 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC26.35■■□□□ 1.81
CUX1P39880 MIR3619-201ENST00000579667 83 ntBASIC26.35■■□□□ 1.81
CUX1P39880 AC104982.3-201ENST00000581995 514 ntBASIC26.35■■□□□ 1.81
CUX1P39880 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX1P39880 AC020914.3-201ENST00000594712 304 ntBASIC26.35■■□□□ 1.81
CUX1P39880 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC26.35■■□□□ 1.81
CUX1P39880 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX1P39880 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX1P39880 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX1P39880 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
CUX1P39880 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 CD8B2-202ENST00000417670 633 ntBASIC26.34■■□□□ 1.81
CUX1P39880 DEF8-202ENST00000418391 852 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX1P39880 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC26.34■■□□□ 1.81
CUX1P39880 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC26.34■■□□□ 1.81
CUX1P39880 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC26.34■■□□□ 1.81
CUX1P39880 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 AC079328.1-201ENST00000560358 952 ntBASIC26.34■■□□□ 1.81
CUX1P39880 GPR39-203ENST00000622084 900 ntTSL 5 BASIC26.34■■□□□ 1.81
CUX1P39880 AC132938.4-201ENST00000623835 848 ntBASIC26.34■■□□□ 1.81
CUX1P39880 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC26.34■■□□□ 1.81
CUX1P39880 AC138627.1-207ENST00000641560 1006 ntBASIC26.34■■□□□ 1.81
CUX1P39880 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX1P39880 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC26.34■■□□□ 1.81
CUX1P39880 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX1P39880 AC092171.3-201ENST00000610122 2651 ntBASIC26.34■■□□□ 1.81
CUX1P39880 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC26.34■■□□□ 1.81
CUX1P39880 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC26.34■■□□□ 1.81
CUX1P39880 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC26.34■■□□□ 1.81
CUX1P39880 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC26.34■■□□□ 1.81
CUX1P39880 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC26.34■■□□□ 1.81
CUX1P39880 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC26.34■■□□□ 1.81
CUX1P39880 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX1P39880 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX1P39880 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
CUX1P39880 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC26.33■■□□□ 1.81
CUX1P39880 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
CUX1P39880 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC26.33■■□□□ 1.81
CUX1P39880 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC26.33■■□□□ 1.81
CUX1P39880 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC26.33■■□□□ 1.81
CUX1P39880 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC26.33■■□□□ 1.81
CUX1P39880 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC26.33■■□□□ 1.81
CUX1P39880 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX1P39880 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC26.33■■□□□ 1.8
CUX1P39880 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC26.32■■□□□ 1.8
CUX1P39880 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
CUX1P39880 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CUX1P39880 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms