Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
BDNFP23560 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 FO393414.2-201ENST00000405153 598 ntBASIC16.94■□□□□ 0.3
BDNFP23560 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 SPTLC1P1-201ENST00000447199 261 ntBASIC16.94■□□□□ 0.3
BDNFP23560 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.94■□□□□ 0.3
BDNFP23560 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.94■□□□□ 0.3
BDNFP23560 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.94■□□□□ 0.3
BDNFP23560 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.94■□□□□ 0.3
BDNFP23560 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.94■□□□□ 0.3
BDNFP23560 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.94■□□□□ 0.3
BDNFP23560 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.94■□□□□ 0.3
BDNFP23560 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.94■□□□□ 0.3
BDNFP23560 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.94■□□□□ 0.3
BDNFP23560 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.94■□□□□ 0.3
BDNFP23560 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 KRT8P37-201ENST00000451609 1420 ntBASIC16.94■□□□□ 0.3
BDNFP23560 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
BDNFP23560 BTBD7P1-201ENST00000447253 1453 ntBASIC16.93■□□□□ 0.3
BDNFP23560 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.93■□□□□ 0.3
BDNFP23560 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
BDNFP23560 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
BDNFP23560 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.93■□□□□ 0.3
BDNFP23560 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
BDNFP23560 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.93■□□□□ 0.3
BDNFP23560 AZGP1P1-201ENST00000411909 902 ntBASIC16.93■□□□□ 0.3
BDNFP23560 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.93■□□□□ 0.3
BDNFP23560 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.93■□□□□ 0.3
BDNFP23560 COX20P2-201ENST00000452636 358 ntBASIC16.93■□□□□ 0.3
BDNFP23560 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 SPDYE18-201ENST00000510091 1050 ntBASIC16.93■□□□□ 0.3
BDNFP23560 SDHAP3-202ENST00000515467 728 ntBASIC16.93■□□□□ 0.3
BDNFP23560 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.93■□□□□ 0.3
BDNFP23560 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 AC004233.3-201ENST00000607794 1269 ntBASIC16.93■□□□□ 0.3
BDNFP23560 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.93■□□□□ 0.3
BDNFP23560 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 AC006449.5-201ENST00000610658 2098 ntBASIC16.93■□□□□ 0.3
BDNFP23560 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.93■□□□□ 0.3
BDNFP23560 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
BDNFP23560 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
BDNFP23560 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
BDNFP23560 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BDNFP23560 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
BDNFP23560 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 AC018695.7-201ENST00000624587 2492 ntBASIC16.92■□□□□ 0.3
BDNFP23560 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.92■□□□□ 0.3
BDNFP23560 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.92■□□□□ 0.3
BDNFP23560 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.92■□□□□ 0.3
BDNFP23560 AC104794.3-201ENST00000566840 1248 ntBASIC16.92■□□□□ 0.3
BDNFP23560 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms