Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGA1P17096 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGA1P17096 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
HMGA1P17096 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HMGA1P17096 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGA1P17096 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
HMGA1P17096 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 AC112492.5-201ENST00000421897 457 ntBASIC16.55■□□□□ 0.24
HMGA1P17096 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.55■□□□□ 0.24
HMGA1P17096 AL442647.2-201ENST00000429864 857 ntBASIC16.55■□□□□ 0.24
HMGA1P17096 ATP5G2P4-201ENST00000442175 420 ntBASIC16.55■□□□□ 0.24
HMGA1P17096 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.55■□□□□ 0.24
HMGA1P17096 AL359881.2-201ENST00000602973 570 ntBASIC16.55■□□□□ 0.24
HMGA1P17096 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 LTB4R2-202ENST00000528054 3092 ntBASIC16.55■□□□□ 0.24
HMGA1P17096 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGA1P17096 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGA1P17096 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGA1P17096 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 PRORSD1P-202ENST00000563365 2154 ntBASIC16.54■□□□□ 0.24
HMGA1P17096 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HMGA1P17096 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HMGA1P17096 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HMGA1P17096 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGA1P17096 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.54■□□□□ 0.24
HMGA1P17096 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGA1P17096 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGA1P17096 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGA1P17096 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.54■□□□□ 0.24
HMGA1P17096 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGA1P17096 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGA1P17096 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGA1P17096 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms