Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL4A1P02462 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A1P02462 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A1P02462 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.32■□□□□ 0.68
COL4A1P02462 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.32■□□□□ 0.68
COL4A1P02462 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A1P02462 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC19.32■□□□□ 0.68
COL4A1P02462 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A1P02462 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 AC069224.1-201ENST00000566372 1715 ntBASIC19.31■□□□□ 0.68
COL4A1P02462 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A1P02462 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A1P02462 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.31■□□□□ 0.68
COL4A1P02462 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.31■□□□□ 0.68
COL4A1P02462 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 AL133267.1-201ENST00000398220 340 ntBASIC19.31■□□□□ 0.68
COL4A1P02462 CNN2P8-201ENST00000421872 913 ntBASIC19.31■□□□□ 0.68
COL4A1P02462 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.31■□□□□ 0.68
COL4A1P02462 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A1P02462 ENPP7P5-201ENST00000541031 1031 ntBASIC19.31■□□□□ 0.68
COL4A1P02462 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL4A1P02462 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.31■□□□□ 0.68
COL4A1P02462 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL4A1P02462 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.31■□□□□ 0.68
COL4A1P02462 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A1P02462 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.31■□□□□ 0.68
COL4A1P02462 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A1P02462 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.31■□□□□ 0.68
COL4A1P02462 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 KRT8P44-201ENST00000441609 1350 ntBASIC19.3■□□□□ 0.68
COL4A1P02462 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL4A1P02462 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A1P02462 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A1P02462 AL138709.1-201ENST00000614840 1693 ntBASIC19.3■□□□□ 0.68
COL4A1P02462 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 RAC2-202ENST00000401529 569 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A1P02462 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A1P02462 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A1P02462 AP001582.1-201ENST00000525856 295 ntBASIC19.3■□□□□ 0.68
COL4A1P02462 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A1P02462 AP001063.1-201ENST00000568332 529 ntBASIC19.3■□□□□ 0.68
COL4A1P02462 AC025279.2-201ENST00000569730 653 ntBASIC19.3■□□□□ 0.68
COL4A1P02462 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A1P02462 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A1P02462 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A1P02462 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A1P02462 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms