Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 BX664615.1-201ENST00000443558 458 ntBASIC16.15■□□□□ 0.18
SHOX2O60902 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.15■□□□□ 0.18
SHOX2O60902 AC112907.2-201ENST00000448639 330 ntBASIC16.15■□□□□ 0.18
SHOX2O60902 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
SHOX2O60902 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
SHOX2O60902 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.15■□□□□ 0.18
SHOX2O60902 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.15■□□□□ 0.18
SHOX2O60902 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.15■□□□□ 0.18
SHOX2O60902 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
SHOX2O60902 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SHOX2O60902 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.14■□□□□ 0.17
SHOX2O60902 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHOX2O60902 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.14■□□□□ 0.17
SHOX2O60902 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 AL359881.3-201ENST00000602640 1721 ntBASIC16.14■□□□□ 0.17
SHOX2O60902 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHOX2O60902 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHOX2O60902 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.14■□□□□ 0.17
SHOX2O60902 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.14■□□□□ 0.17
SHOX2O60902 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 AC005521.1-201ENST00000393351 872 ntBASIC16.14■□□□□ 0.17
SHOX2O60902 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
SHOX2O60902 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.14■□□□□ 0.17
SHOX2O60902 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.14■□□□□ 0.17
SHOX2O60902 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHOX2O60902 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.14■□□□□ 0.17
SHOX2O60902 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
SHOX2O60902 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 CICP8-201ENST00000455800 2813 ntBASIC16.13■□□□□ 0.17
SHOX2O60902 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHOX2O60902 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.13■□□□□ 0.17
SHOX2O60902 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.13■□□□□ 0.17
SHOX2O60902 SPDYE21P-201ENST00000413323 827 ntBASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms