Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 POLD2P1-201ENST00000511220 997 ntBASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AL138918.1-201ENST00000568306 659 ntBASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 ACTG1P22-201ENST00000603793 1099 ntBASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC027281.2-201ENST00000623856 713 ntBASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS9D1Q9Y2B5 AC010491.1-201ENST00000563101 2797 ntBASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 AL451064.1-201ENST00000607718 471 ntBASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 AC048344.4-201ENST00000619744 527 ntBASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS9D1Q9Y2B5 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.17
VPS9D1Q9Y2B5 AP005117.1-202ENST00000581724 1908 ntBASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 FAM220BP-201ENST00000377689 816 ntBASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 AC142381.1-201ENST00000426099 345 ntBASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 HTR5BP-201ENST00000430851 1154 ntBASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 AC243562.2-201ENST00000561247 970 ntBASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 AC105148.1-201ENST00000604961 409 ntBASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms