Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.26■□□□□ 0.19
TRIM4Q9C037 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 AC124947.2-201ENST00000547118 1133 ntBASIC16.26■□□□□ 0.19
TRIM4Q9C037 AC004449.1-201ENST00000564240 433 ntBASIC16.26■□□□□ 0.19
TRIM4Q9C037 AC073592.5-201ENST00000624854 528 ntBASIC16.26■□□□□ 0.19
TRIM4Q9C037 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 OR2I1P-210ENST00000642037 4691 ntBASIC16.26■□□□□ 0.19
TRIM4Q9C037 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM4Q9C037 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM4Q9C037 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 ELL2P1-201ENST00000413990 1906 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 BX005266.1-201ENST00000473402 457 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 STK19B-204ENST00000512515 211 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 AL513190.1-201ENST00000621254 727 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 AF228730.6-201ENST00000641497 218 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 AC084121.3-201ENST00000641716 218 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 AC105233.6-201ENST00000642093 218 ntBASIC16.25■□□□□ 0.19
TRIM4Q9C037 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM4Q9C037 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM4Q9C037 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 AC078925.2-201ENST00000624013 1973 ntBASIC16.24■□□□□ 0.19
TRIM4Q9C037 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 AC148477.5-201ENST00000625164 1645 ntBASIC16.24■□□□□ 0.19
TRIM4Q9C037 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 AC003669.1-201ENST00000334569 611 ntBASIC16.24■□□□□ 0.19
TRIM4Q9C037 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM4Q9C037 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 PRSS29P-201ENST00000440800 595 ntBASIC16.24■□□□□ 0.19
TRIM4Q9C037 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM4Q9C037 AC069262.1-201ENST00000539058 672 ntBASIC16.24■□□□□ 0.19
TRIM4Q9C037 AC190387.1-201ENST00000551683 408 ntBASIC16.24■□□□□ 0.19
TRIM4Q9C037 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms