Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 AL391005.1-201ENST00000623953 2435 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 AL353779.1-201ENST00000434793 351 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 AC114501.2-201ENST00000439631 535 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 MIR4321-201ENST00000592276 80 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 AL033527.5-202ENST00000641632 1098 ntBASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRAIPQ9BWF2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
TRAIPQ9BWF2 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.64■□□□□ 0.42
TRAIPQ9BWF2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AC005622.1-201ENST00000636801 1703 ntBASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AC135586.1-201ENST00000539323 574 ntBASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AL596325.1-201ENST00000563991 1082 ntBASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAIPQ9BWF2 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms