Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 AC023141.13-201ENST00000604991 943 ntBASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 AL691432.3-201ENST00000621860 400 ntBASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC54Q8NEL0 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AC008677.1-201ENST00000519230 1561 ntBASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AC092474.2-201ENST00000424288 719 ntBASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AC098831.1-202ENST00000438821 336 ntBASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 HCG4B-203ENST00000450128 991 ntBASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 AL078644.1-201ENST00000609881 752 ntBASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 C8orf49-201ENST00000525043 1968 ntBASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC54Q8NEL0 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 AC009947.1-201ENST00000444350 727 ntBASIC14.12□□□□□ -0.15
CCDC54Q8NEL0 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms