Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 SLC25A1P3-201ENST00000395415 828 ntBASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 Z97180.1-201ENST00000445173 988 ntBASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
SMC1BQ8NDV3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SMC1BQ8NDV3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 MIR1202-201ENST00000408529 83 ntBASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 AC138028.4-201ENST00000564984 1845 ntBASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 AL354751.1-201ENST00000412768 1863 ntBASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 TUBB8P12-201ENST00000308911 1335 ntBASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 TUBB7P-202ENST00000428444 1305 ntBASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 TUBB8P7-204ENST00000567960 1332 ntBASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMC1BQ8NDV3 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMC1BQ8NDV3 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms