Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 OR2I1P-209ENST00000641730 5365 ntBASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 KRT18P58-201ENST00000527480 1120 ntBASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AC069224.1-201ENST00000566372 1715 ntBASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AC005593.1-201ENST00000624894 515 ntBASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 CICP13-201ENST00000422015 2789 ntBASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 PRAL-201ENST00000624952 3286 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 AC004817.3-201ENST00000602957 2129 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 MIR7706-201ENST00000613747 67 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 AC023157.3-201ENST00000619086 2088 ntBASIC15.12■□□□□ 0.01
DEPDC4Q8N2C3 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 GPAA1P2-202ENST00000606848 1787 ntBASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 NCF1C-201ENST00000438382 1427 ntBASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms