Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 GRN-222ENST00000639447 1314 ntTSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 C1QBPP1-201ENST00000400117 770 ntBASIC11.01□□□□□ -0.65
CSMD3Q7Z407 PTPA-217ENST00000434095 870 ntTSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 POM121L10P-201ENST00000436994 1285 ntBASIC11.01□□□□□ -0.65
CSMD3Q7Z407 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.01□□□□□ -0.65
CSMD3Q7Z407 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 YRDCP1-201ENST00000621419 643 ntBASIC11.01□□□□□ -0.65
CSMD3Q7Z407 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 AL138709.1-201ENST00000614840 1693 ntBASIC11.01□□□□□ -0.65
CSMD3Q7Z407 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CSMD3Q7Z407 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC104982.3-201ENST00000581995 514 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 ECM1P1-201ENST00000604092 1279 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 AL645939.5-201ENST00000606834 243 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC11□□□□□ -0.65
CSMD3Q7Z407 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC11□□□□□ -0.65
CSMD3Q7Z407 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 KRTAP10-13P-201ENST00000412914 571 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC11□□□□□ -0.65
CSMD3Q7Z407 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC104596.2-201ENST00000512793 793 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC11□□□□□ -0.65
CSMD3Q7Z407 MIR3907-201ENST00000579424 151 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC11□□□□□ -0.65
CSMD3Q7Z407 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC018635.2-201ENST00000608625 364 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 AHCYP2-201ENST00000430630 1300 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
CSMD3Q7Z407 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
CSMD3Q7Z407 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
CSMD3Q7Z407 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11□□□□□ -0.65
CSMD3Q7Z407 AC004987.2-201ENST00000395959 1148 ntBASIC11□□□□□ -0.65
CSMD3Q7Z407 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC11□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms