Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AL353705.2-201ENST00000428243 662 ntBASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AC055876.2-201ENST00000531834 546 ntBASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 AC068418.2-201ENST00000577309 3703 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 RNU1-129P-201ENST00000384064 167 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 AC105233.2-201ENST00000523697 349 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 AF228730.5-201ENST00000530288 346 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 U1.21-201ENST00000580816 167 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 CTBP2P3-201ENST00000585629 1255 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 AL139099.5-201ENST00000635274 300 ntBASIC15.52■□□□□ 0.08
COL28A1Q2UY09 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.52■□□□□ 0.08
COL28A1Q2UY09 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
COL28A1Q2UY09 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 AL021920.2-201ENST00000624828 1351 ntBASIC15.51■□□□□ 0.07
COL28A1Q2UY09 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms