Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN9P43378 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PTPN9P43378 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN9P43378 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN9P43378 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN9P43378 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.72■□□□□ 0.27
PTPN9P43378 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN9P43378 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN9P43378 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.72■□□□□ 0.27
PTPN9P43378 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PTPN9P43378 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PTPN9P43378 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.71■□□□□ 0.27
PTPN9P43378 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN9P43378 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 AC015911.4-201ENST00000588022 1070 ntBASIC16.71■□□□□ 0.27
PTPN9P43378 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 AC006538.3-201ENST00000612495 578 ntBASIC16.71■□□□□ 0.27
PTPN9P43378 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN9P43378 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.71■□□□□ 0.27
PTPN9P43378 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PTPN9P43378 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
PTPN9P43378 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PTPN9P43378 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN9P43378 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN9P43378 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.71■□□□□ 0.27
PTPN9P43378 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.71■□□□□ 0.26
PTPN9P43378 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.26
PTPN9P43378 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PTPN9P43378 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTPN9P43378 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms