Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.14■□□□□ 0.65
BRCA1P38398 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
BRCA1P38398 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC19.14■□□□□ 0.65
BRCA1P38398 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.14■□□□□ 0.65
BRCA1P38398 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
BRCA1P38398 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
BRCA1P38398 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 AL390961.4-201ENST00000623958 2535 ntBASIC19.13■□□□□ 0.65
BRCA1P38398 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
BRCA1P38398 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC19.13■□□□□ 0.65
BRCA1P38398 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
BRCA1P38398 SUN1-204ENST00000403868 978 ntTSL 2 BASIC19.13■□□□□ 0.65
BRCA1P38398 PFN2-202ENST00000423691 911 ntTSL 2 BASIC19.13■□□□□ 0.65
BRCA1P38398 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC19.13■□□□□ 0.65
BRCA1P38398 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
BRCA1P38398 AC244157.2-201ENST00000616239 1006 ntBASIC19.13■□□□□ 0.65
BRCA1P38398 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
BRCA1P38398 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRCA1P38398 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.12■□□□□ 0.65
BRCA1P38398 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
BRCA1P38398 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 MARK2P5-201ENST00000507649 634 ntBASIC19.12■□□□□ 0.65
BRCA1P38398 CFL1-206ENST00000527344 962 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.12■□□□□ 0.65
BRCA1P38398 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC19.12■□□□□ 0.65
BRCA1P38398 AP001002.3-201ENST00000623482 206 ntBASIC19.12■□□□□ 0.65
BRCA1P38398 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC19.12■□□□□ 0.65
BRCA1P38398 HLA-C-210ENST00000640219 976 ntBASIC19.12■□□□□ 0.65
BRCA1P38398 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
BRCA1P38398 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
BRCA1P38398 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BRCA1P38398 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC19.12■□□□□ 0.65
BRCA1P38398 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
BRCA1P38398 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 EIF3FP3-201ENST00000434851 1086 ntBASIC19.11■□□□□ 0.65
BRCA1P38398 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.11■□□□□ 0.65
BRCA1P38398 OARD1-204ENST00000464633 717 ntTSL 2 BASIC19.11■□□□□ 0.65
BRCA1P38398 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
BRCA1P38398 MIR4783-201ENST00000580343 82 ntBASIC19.11■□□□□ 0.65
BRCA1P38398 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.11■□□□□ 0.65
BRCA1P38398 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.11■□□□□ 0.65
BRCA1P38398 AL161670.2-201ENST00000557650 1227 ntBASIC19.11■□□□□ 0.65
BRCA1P38398 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC19.11■□□□□ 0.65
BRCA1P38398 BX539320.1-201ENST00000623759 877 ntBASIC19.11■□□□□ 0.65
BRCA1P38398 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BRCA1P38398 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
BRCA1P38398 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms