Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC4P35249 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC20.05■□□□□ 0.8
RFC4P35249 RHOQP1-201ENST00000555758 579 ntBASIC20.05■□□□□ 0.8
RFC4P35249 AL022328.3-201ENST00000607943 679 ntBASIC20.05■□□□□ 0.8
RFC4P35249 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.05■□□□□ 0.8
RFC4P35249 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.05■□□□□ 0.8
RFC4P35249 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFC4P35249 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFC4P35249 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC4P35249 REXO1L8P-201ENST00000604378 1897 ntBASIC20.05■□□□□ 0.8
RFC4P35249 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.05■□□□□ 0.8
RFC4P35249 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC4P35249 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC4P35249 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC20.04■□□□□ 0.8
RFC4P35249 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RFC4P35249 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 BRF1-202ENST00000379932 884 ntTSL 5 BASIC20.04■□□□□ 0.8
RFC4P35249 CNN2P8-201ENST00000421872 913 ntBASIC20.04■□□□□ 0.8
RFC4P35249 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.04■□□□□ 0.8
RFC4P35249 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC20.04■□□□□ 0.8
RFC4P35249 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC20.04■□□□□ 0.8
RFC4P35249 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC20.04■□□□□ 0.8
RFC4P35249 GNRHR2-203ENST00000581100 1187 ntBASIC20.04■□□□□ 0.8
RFC4P35249 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RFC4P35249 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.04■□□□□ 0.8
RFC4P35249 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC4P35249 PCDHB18P-201ENST00000524813 2368 ntBASIC20.03■□□□□ 0.8
RFC4P35249 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RFC4P35249 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.03■□□□□ 0.8
RFC4P35249 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.03■□□□□ 0.8
RFC4P35249 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RFC4P35249 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC20.03■□□□□ 0.8
RFC4P35249 ELK2AP-201ENST00000392510 1007 ntBASIC20.03■□□□□ 0.8
RFC4P35249 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.03■□□□□ 0.8
RFC4P35249 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC20.03■□□□□ 0.8
RFC4P35249 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 PHKG1P2-201ENST00000457537 863 ntBASIC20.03■□□□□ 0.8
RFC4P35249 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.03■□□□□ 0.8
RFC4P35249 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.03■□□□□ 0.8
RFC4P35249 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.03■□□□□ 0.8
RFC4P35249 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.03■□□□□ 0.8
RFC4P35249 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.03■□□□□ 0.8
RFC4P35249 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFC4P35249 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
RFC4P35249 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.02■□□□□ 0.8
RFC4P35249 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.02■□□□□ 0.8
RFC4P35249 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RFC4P35249 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RFC4P35249 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
RFC4P35249 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 ACKR1-201ENST00000368121 1240 ntBASIC20.02■□□□□ 0.8
RFC4P35249 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.02■□□□□ 0.8
RFC4P35249 AC022137.2-201ENST00000503482 481 ntBASIC20.02■□□□□ 0.8
RFC4P35249 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
RFC4P35249 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20.02■□□□□ 0.8
RFC4P35249 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
RFC4P35249 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.02■□□□□ 0.8
RFC4P35249 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.02■□□□□ 0.8
RFC4P35249 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.02■□□□□ 0.8
RFC4P35249 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.02■□□□□ 0.8
RFC4P35249 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms