Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.2■□□□□ 0.02
COL5A1P20908 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
COL5A1P20908 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
COL5A1P20908 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.2■□□□□ 0.02
COL5A1P20908 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.2■□□□□ 0.02
COL5A1P20908 AC097359.3-201ENST00000603982 1210 ntBASIC15.2■□□□□ 0.02
COL5A1P20908 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.2■□□□□ 0.02
COL5A1P20908 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.2■□□□□ 0.02
COL5A1P20908 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.2■□□□□ 0.02
COL5A1P20908 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.2■□□□□ 0.02
COL5A1P20908 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL5A1P20908 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL5A1P20908 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.19■□□□□ 0.02
COL5A1P20908 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.19■□□□□ 0.02
COL5A1P20908 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL5A1P20908 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 C2orf27AP3-201ENST00000434123 579 ntBASIC15.19■□□□□ 0.02
COL5A1P20908 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.19■□□□□ 0.02
COL5A1P20908 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.19■□□□□ 0.02
COL5A1P20908 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
COL5A1P20908 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.19■□□□□ 0.02
COL5A1P20908 AL354718.3-201ENST00000616414 581 ntBASIC15.19■□□□□ 0.02
COL5A1P20908 CR382287.1-201ENST00000623954 586 ntBASIC15.19■□□□□ 0.02
COL5A1P20908 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.19■□□□□ 0.02
COL5A1P20908 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL5A1P20908 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL5A1P20908 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.19■□□□□ 0.02
COL5A1P20908 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.18■□□□□ 0.02
COL5A1P20908 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
COL5A1P20908 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 AC091804.1-201ENST00000486888 567 ntBASIC15.18■□□□□ 0.02
COL5A1P20908 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.18■□□□□ 0.02
COL5A1P20908 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.18■□□□□ 0.02
COL5A1P20908 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.18■□□□□ 0.02
COL5A1P20908 AC005695.3-201ENST00000614522 232 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms