Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.62■□□□□ 0.57
LIG1P18858 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG1P18858 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.62■□□□□ 0.57
LIG1P18858 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.62■□□□□ 0.57
LIG1P18858 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LIG1P18858 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG1P18858 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
LIG1P18858 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.62■□□□□ 0.57
LIG1P18858 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.62■□□□□ 0.57
LIG1P18858 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.61■□□□□ 0.57
LIG1P18858 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 RHOQP3-201ENST00000437982 621 ntBASIC18.61■□□□□ 0.57
LIG1P18858 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.61■□□□□ 0.57
LIG1P18858 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIG1P18858 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG1P18858 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LIG1P18858 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG1P18858 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.6■□□□□ 0.57
LIG1P18858 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.6■□□□□ 0.57
LIG1P18858 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 AC004832.2-201ENST00000426397 482 ntBASIC18.6■□□□□ 0.57
LIG1P18858 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.6■□□□□ 0.57
LIG1P18858 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.6■□□□□ 0.57
LIG1P18858 MIR3687-2-201ENST00000577708 61 ntBASIC18.6■□□□□ 0.57
LIG1P18858 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.6■□□□□ 0.57
LIG1P18858 MIR3687-1-201ENST00000614492 61 ntBASIC18.6■□□□□ 0.57
LIG1P18858 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.6■□□□□ 0.57
LIG1P18858 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.6■□□□□ 0.57
LIG1P18858 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIG1P18858 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG1P18858 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG1P18858 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIG1P18858 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG1P18858 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIG1P18858 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LIG1P18858 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG1P18858 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG1P18858 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms