Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
TNFP01375 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
TNFP01375 AZGP1P1-201ENST00000411909 902 ntBASIC15.69■□□□□ 0.1
TNFP01375 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 COX5BP8-201ENST00000416911 349 ntBASIC15.69■□□□□ 0.1
TNFP01375 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.69■□□□□ 0.1
TNFP01375 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.69■□□□□ 0.1
TNFP01375 AL589987.1-201ENST00000453380 819 ntBASIC15.69■□□□□ 0.1
TNFP01375 MEIS3P1-201ENST00000495167 958 ntBASIC15.69■□□□□ 0.1
TNFP01375 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.69■□□□□ 0.1
TNFP01375 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 AC092337.1-201ENST00000568699 1129 ntBASIC15.69■□□□□ 0.1
TNFP01375 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 AC138969.3-201ENST00000546612 1459 ntBASIC15.69■□□□□ 0.1
TNFP01375 AC138932.2-201ENST00000548268 1459 ntBASIC15.69■□□□□ 0.1
TNFP01375 AC126755.4-201ENST00000549796 1459 ntBASIC15.69■□□□□ 0.1
TNFP01375 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.69■□□□□ 0.1
TNFP01375 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.69■□□□□ 0.1
TNFP01375 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TNFP01375 Z97205.2-201ENST00000564697 1639 ntBASIC15.68■□□□□ 0.1
TNFP01375 AC026471.1-201ENST00000564629 3026 ntBASIC15.68■□□□□ 0.1
TNFP01375 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.68■□□□□ 0.1
TNFP01375 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.68■□□□□ 0.1
TNFP01375 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
TNFP01375 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
TNFP01375 DGCR5-201ENST00000399539 862 ntBASIC15.68■□□□□ 0.1
TNFP01375 AP006294.1-201ENST00000415407 339 ntBASIC15.68■□□□□ 0.1
TNFP01375 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.68■□□□□ 0.1
TNFP01375 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.68■□□□□ 0.1
TNFP01375 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.68■□□□□ 0.1
TNFP01375 EEF1DP4-201ENST00000446006 880 ntBASIC15.68■□□□□ 0.1
TNFP01375 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.68■□□□□ 0.1
TNFP01375 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.68■□□□□ 0.1
TNFP01375 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.68■□□□□ 0.1
TNFP01375 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 AC008494.3-201ENST00000606615 944 ntBASIC15.68■□□□□ 0.1
TNFP01375 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TNFP01375 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TNFP01375 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.67■□□□□ 0.1
TNFP01375 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.67■□□□□ 0.1
TNFP01375 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.67■□□□□ 0.1
TNFP01375 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.67■□□□□ 0.1
TNFP01375 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.67■□□□□ 0.1
TNFP01375 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TNFP01375 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms