Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CLPTM1O96005 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.32■□□□□ 0.04
CLPTM1O96005 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.32■□□□□ 0.04
CLPTM1O96005 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLPTM1O96005 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLPTM1O96005 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 AP003680.1-201ENST00000598970 3660 ntBASIC15.31■□□□□ 0.04
CLPTM1O96005 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.31■□□□□ 0.04
CLPTM1O96005 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
CLPTM1O96005 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.31■□□□□ 0.04
CLPTM1O96005 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.31■□□□□ 0.04
CLPTM1O96005 AL671710.1-201ENST00000610245 2349 ntBASIC15.31■□□□□ 0.04
CLPTM1O96005 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.31■□□□□ 0.04
CLPTM1O96005 NUS1P1-201ENST00000446295 882 ntBASIC15.31■□□□□ 0.04
CLPTM1O96005 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.31■□□□□ 0.04
CLPTM1O96005 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.31■□□□□ 0.04
CLPTM1O96005 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.31■□□□□ 0.04
CLPTM1O96005 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.31■□□□□ 0.04
CLPTM1O96005 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.31■□□□□ 0.04
CLPTM1O96005 AC109462.3-201ENST00000573934 613 ntBASIC15.31■□□□□ 0.04
CLPTM1O96005 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.31■□□□□ 0.04
CLPTM1O96005 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.31■□□□□ 0.04
CLPTM1O96005 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 AC041040.2-201ENST00000622926 2899 ntBASIC15.31■□□□□ 0.04
CLPTM1O96005 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
CLPTM1O96005 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLPTM1O96005 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLPTM1O96005 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLPTM1O96005 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.3■□□□□ 0.04
CLPTM1O96005 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CLPTM1O96005 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CLPTM1O96005 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.3■□□□□ 0.04
CLPTM1O96005 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLPTM1O96005 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CLPTM1O96005 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms