Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.51■□□□□ 0.39
RNF40O75150 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.51■□□□□ 0.39
RNF40O75150 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RNF40O75150 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.51■□□□□ 0.39
RNF40O75150 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
RNF40O75150 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.5■□□□□ 0.39
RNF40O75150 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RNF40O75150 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.5■□□□□ 0.39
RNF40O75150 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 SPCS2P1-201ENST00000561636 679 ntBASIC17.5■□□□□ 0.39
RNF40O75150 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.5■□□□□ 0.39
RNF40O75150 AC022145.2-201ENST00000598203 171 ntBASIC17.5■□□□□ 0.39
RNF40O75150 AC093512.1-201ENST00000617969 520 ntBASIC17.5■□□□□ 0.39
RNF40O75150 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF40O75150 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
RNF40O75150 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF40O75150 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RNF40O75150 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.49■□□□□ 0.39
RNF40O75150 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.49■□□□□ 0.39
RNF40O75150 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.49■□□□□ 0.39
RNF40O75150 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.49■□□□□ 0.39
RNF40O75150 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.49■□□□□ 0.39
RNF40O75150 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 ACTL9-202ENST00000612068 1252 ntBASIC17.49■□□□□ 0.39
RNF40O75150 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 AL009178.2-201ENST00000597278 2719 ntBASIC17.49■□□□□ 0.39
RNF40O75150 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.49■□□□□ 0.39
RNF40O75150 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RNF40O75150 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF40O75150 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF40O75150 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 AC023141.5-201ENST00000458585 616 ntBASIC17.48■□□□□ 0.39
RNF40O75150 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF40O75150 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF40O75150 AC112191.1-201ENST00000523689 701 ntBASIC17.48■□□□□ 0.39
RNF40O75150 AP002490.2-201ENST00000524791 560 ntBASIC17.48■□□□□ 0.39
RNF40O75150 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF40O75150 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
RNF40O75150 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF40O75150 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF40O75150 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
RNF40O75150 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms