Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TCRBV3S1A0A5B6 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 NUS1P2-201ENST00000417358 873 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC132008.2-207ENST00000454517 770 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AL365330.1-201ENST00000607459 531 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC021097.1-201ENST00000607902 574 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC091076.1-201ENST00000610741 619 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 AC012569.1-201ENST00000591191 1524 ntBASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TCRBV3S1A0A5B6 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 AC006504.4-201ENST00000592118 1568 ntBASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 ELK2BP-201ENST00000415014 1224 ntBASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 AC099336.1-202ENST00000602961 463 ntBASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TCRBV3S1A0A5B6 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms