Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AP001282.1-201ENST00000531301 1499 ntBASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
TCRBV7S3A2A0A539 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC006486.2-201ENST00000624246 2199 ntBASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AL590627.1-203ENST00000421194 1026 ntBASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC061975.2-201ENST00000581722 295 ntBASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.39■□□□□ 0.21
TCRBV7S3A2A0A539 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC138035.3-201ENST00000622706 2791 ntBASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC023157.3-201ENST00000619086 2088 ntBASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC002056.1-201ENST00000395613 760 ntBASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AL109954.1-202ENST00000564051 2148 ntBASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC140113.2-201ENST00000604370 208 ntBASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.38■□□□□ 0.21
TCRBV7S3A2A0A539 TMBIM7P-203ENST00000641617 1718 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms