Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 AC092933.1-201ENST00000393644 945 ntBASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 MIR5189-201ENST00000577370 114 ntBASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.46■□□□□ 0.06
PCDHGA1Q9Y5H4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
PCDHGA1Q9Y5H4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
PCDHGA1Q9Y5H4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.46■□□□□ 0.06
PCDHGA1Q9Y5H4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PCDHGA1Q9Y5H4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AC093525.8-201ENST00000624099 1342 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AL645608.8-201ENST00000606034 2086 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 ENPP7P5-201ENST00000541031 1031 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PP12613-201ENST00000424958 2230 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AC020907.1-201ENST00000616460 1350 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AL391005.1-201ENST00000623953 2435 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 CROCCP2-202ENST00000412962 2773 ntBASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.45■□□□□ 0.06
PCDHGA1Q9Y5H4 AC092068.3-201ENST00000587894 2016 ntBASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 U82695.1-201ENST00000635752 1889 ntBASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 BRWD1P1-201ENST00000401091 371 ntBASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.44■□□□□ 0.06
PCDHGA1Q9Y5H4 FAM21FP-201ENST00000426241 1131 ntBASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms