Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC30.35■■■□□ 2.45
SHROOM4Q9ULL8 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 IGHJ2P-201ENST00000454480 60 ntBASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 KRT90P-201ENST00000549264 1064 ntBASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 AC124283.3-201ENST00000570869 594 ntBASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC30.34■■■□□ 2.45
SHROOM4Q9ULL8 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 PAM16-215ENST00000577031 548 ntTSL 4 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 AMT-232ENST00000636199 1546 ntTSL 5 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHROOM4Q9ULL8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.45
SHROOM4Q9ULL8 REXO1L8P-201ENST00000604378 1897 ntBASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 NAT9-224ENST00000583757 583 ntTSL 3 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 AC009542.2-202ENST00000619004 1067 ntBASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHROOM4Q9ULL8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 LINC01115-203ENST00000606068 577 ntBASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 AZGP1P1-201ENST00000411909 902 ntBASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms