Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC011477.6-201ENST00000604980 1927 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 RPS8P6-201ENST00000426177 609 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 RBPMS2P1-201ENST00000437762 623 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 SPDYE14P-201ENST00000442619 822 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 DNAJB3-202ENST00000449667 1266 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC243562.2-201ENST00000561247 970 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 NIFKP4-201ENST00000567275 1192 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AL596442.2-201ENST00000610240 980 ntBASIC12.49□□□□□ -0.41
CCDC140Q96MF4 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.49□□□□□ -0.41
CCDC140Q96MF4 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 AL136982.4-201ENST00000437689 1740 ntBASIC12.48□□□□□ -0.41
CCDC140Q96MF4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 AL691432.1-201ENST00000596308 1422 ntBASIC12.48□□□□□ -0.41
CCDC140Q96MF4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 SNHG9-202ENST00000564014 471 ntBASIC12.48□□□□□ -0.41
CCDC140Q96MF4 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 AC026150.2-201ENST00000564693 1156 ntBASIC12.48□□□□□ -0.41
CCDC140Q96MF4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.48□□□□□ -0.41
CCDC140Q96MF4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms