Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
HPS3Q969F9 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HPS3Q969F9 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.89■□□□□ 0.45
HPS3Q969F9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
HPS3Q969F9 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HPS3Q969F9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.89■□□□□ 0.45
HPS3Q969F9 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 GPS2P2-201ENST00000430745 888 ntBASIC17.89■□□□□ 0.45
HPS3Q969F9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.89■□□□□ 0.45
HPS3Q969F9 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.89■□□□□ 0.45
HPS3Q969F9 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.89■□□□□ 0.45
HPS3Q969F9 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 KRT8P23-201ENST00000560090 1207 ntBASIC17.89■□□□□ 0.45
HPS3Q969F9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.89■□□□□ 0.45
HPS3Q969F9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
HPS3Q969F9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HPS3Q969F9 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HPS3Q969F9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.88■□□□□ 0.45
HPS3Q969F9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.88■□□□□ 0.45
HPS3Q969F9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 FAM220BP-201ENST00000377689 816 ntBASIC17.88■□□□□ 0.45
HPS3Q969F9 AC211486.1-202ENST00000416371 468 ntBASIC17.88■□□□□ 0.45
HPS3Q969F9 AL627223.1-201ENST00000416693 442 ntBASIC17.88■□□□□ 0.45
HPS3Q969F9 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.88■□□□□ 0.45
HPS3Q969F9 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.88■□□□□ 0.45
HPS3Q969F9 AC211476.1-201ENST00000503899 468 ntBASIC17.88■□□□□ 0.45
HPS3Q969F9 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.88■□□□□ 0.45
HPS3Q969F9 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
HPS3Q969F9 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.88■□□□□ 0.45
HPS3Q969F9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.88■□□□□ 0.45
HPS3Q969F9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
HPS3Q969F9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.88■□□□□ 0.45
HPS3Q969F9 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.88■□□□□ 0.45
HPS3Q969F9 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HPS3Q969F9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 CICP13-201ENST00000422015 2789 ntBASIC17.87■□□□□ 0.45
HPS3Q969F9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
HPS3Q969F9 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.87■□□□□ 0.45
HPS3Q969F9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.87■□□□□ 0.45
HPS3Q969F9 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.87■□□□□ 0.45
HPS3Q969F9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.87■□□□□ 0.45
HPS3Q969F9 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
HPS3Q969F9 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.87■□□□□ 0.45
HPS3Q969F9 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 AC134684.3-201ENST00000641758 218 ntBASIC17.87■□□□□ 0.45
HPS3Q969F9 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HPS3Q969F9 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms