Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SYNE4Q8N205 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SYNE4Q8N205 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SYNE4Q8N205 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 BOLA2P3-201ENST00000404566 256 ntBASIC19.91■□□□□ 0.78
SYNE4Q8N205 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 AC245100.5-201ENST00000452108 331 ntBASIC19.91■□□□□ 0.78
SYNE4Q8N205 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SYNE4Q8N205 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 BTNL10-201ENST00000595971 695 ntBASIC19.91■□□□□ 0.78
SYNE4Q8N205 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SYNE4Q8N205 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SYNE4Q8N205 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.91■□□□□ 0.78
SYNE4Q8N205 AL133338.1-201ENST00000565695 1517 ntBASIC19.91■□□□□ 0.78
SYNE4Q8N205 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 AD000864.1-201ENST00000624076 2295 ntBASIC19.9■□□□□ 0.78
SYNE4Q8N205 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 ACTBP11-201ENST00000436287 1126 ntBASIC19.9■□□□□ 0.78
SYNE4Q8N205 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 AC104596.2-201ENST00000512793 793 ntBASIC19.9■□□□□ 0.78
SYNE4Q8N205 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 GPR182-203ENST00000622922 591 ntBASIC19.9■□□□□ 0.78
SYNE4Q8N205 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
SYNE4Q8N205 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SYNE4Q8N205 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.78
SYNE4Q8N205 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 PCDH8P1-201ENST00000428983 2773 ntBASIC19.89■□□□□ 0.77
SYNE4Q8N205 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 AL359711.2-201ENST00000563105 872 ntBASIC19.89■□□□□ 0.77
SYNE4Q8N205 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.89■□□□□ 0.77
SYNE4Q8N205 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.89■□□□□ 0.77
SYNE4Q8N205 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.89■□□□□ 0.77
SYNE4Q8N205 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SYNE4Q8N205 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 REXO1L1P-202ENST00000608646 1974 ntBASIC19.88■□□□□ 0.77
SYNE4Q8N205 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SYNE4Q8N205 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
SYNE4Q8N205 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms