Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 AC004987.2-201ENST00000395959 1148 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 ATP5G2P4-201ENST00000442175 420 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 AC245100.5-201ENST00000452108 331 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 RRP7BP-205ENST00000566851 833 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 AC132938.2-201ENST00000579188 680 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 AC093726.1-201ENST00000608064 963 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 AL591163.1-201ENST00000641757 987 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 AL691432.1-201ENST00000596308 1422 ntBASIC17.12■□□□□ 0.33
USP41Q3LFD5 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ARSEP1-201ENST00000420443 635 ntBASIC17.11■□□□□ 0.33
USP41Q3LFD5 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.11■□□□□ 0.33
USP41Q3LFD5 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP41Q3LFD5 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 AL513477.1-201ENST00000602865 2407 ntBASIC17.1■□□□□ 0.33
USP41Q3LFD5 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 ELK1P1-201ENST00000485699 580 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms