Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA3P55318 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 AC148477.5-201ENST00000625164 1645 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
FOXA3P55318 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 LINC00982-205ENST00000420957 435 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC12.2□□□□□ -0.46
FOXA3P55318 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 KRT18P38-201ENST00000449496 1282 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 AC010203.1-204ENST00000548782 407 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.2□□□□□ -0.46
FOXA3P55318 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA3P55318 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.2□□□□□ -0.46
FOXA3P55318 AC090616.6-201ENST00000582640 721 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC12.2□□□□□ -0.46
FOXA3P55318 AC020765.3-201ENST00000613051 740 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA3P55318 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 AC079781.5-202ENST00000641784 3743 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
FOXA3P55318 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
FOXA3P55318 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 AC117489.1-201ENST00000625169 3217 ntBASIC12.2□□□□□ -0.46
FOXA3P55318 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA3P55318 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 AC004817.3-201ENST00000602957 2129 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 AL590787.1-201ENST00000568856 1315 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 AC008677.1-201ENST00000519230 1561 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
FOXA3P55318 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
FOXA3P55318 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.19□□□□□ -0.46
FOXA3P55318 DUT-205ENST00000558813 769 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 AC139887.4-201ENST00000607877 719 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 AL592071.1-201ENST00000611956 408 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.19□□□□□ -0.46
FOXA3P55318 GRK6P1-201ENST00000400595 1711 ntBASIC12.19□□□□□ -0.46
FOXA3P55318 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
FOXA3P55318 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
FOXA3P55318 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms