Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LIG3P49916 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.08■□□□□ 0.33
LIG3P49916 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.08■□□□□ 0.32
LIG3P49916 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
LIG3P49916 BX842568.4-201ENST00000421222 227 ntBASIC17.08■□□□□ 0.32
LIG3P49916 SLC25A6P2-201ENST00000497974 877 ntBASIC17.08■□□□□ 0.32
LIG3P49916 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.08■□□□□ 0.32
LIG3P49916 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.08■□□□□ 0.32
LIG3P49916 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.08■□□□□ 0.32
LIG3P49916 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.08■□□□□ 0.32
LIG3P49916 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.08■□□□□ 0.32
LIG3P49916 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LIG3P49916 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.08■□□□□ 0.32
LIG3P49916 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIG3P49916 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LIG3P49916 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.07■□□□□ 0.32
LIG3P49916 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.07■□□□□ 0.32
LIG3P49916 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 KRT18P13-201ENST00000400056 1290 ntBASIC17.07■□□□□ 0.32
LIG3P49916 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
LIG3P49916 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.07■□□□□ 0.32
LIG3P49916 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 AC010507.1-201ENST00000633895 436 ntBASIC17.07■□□□□ 0.32
LIG3P49916 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
LIG3P49916 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.07■□□□□ 0.32
LIG3P49916 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIG3P49916 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.06■□□□□ 0.32
LIG3P49916 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LIG3P49916 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.06■□□□□ 0.32
LIG3P49916 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.06■□□□□ 0.32
LIG3P49916 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.06■□□□□ 0.32
LIG3P49916 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.06■□□□□ 0.32
LIG3P49916 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.06■□□□□ 0.32
LIG3P49916 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 AC096734.2-201ENST00000562054 433 ntBASIC17.06■□□□□ 0.32
LIG3P49916 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.06■□□□□ 0.32
LIG3P49916 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
LIG3P49916 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.06■□□□□ 0.32
LIG3P49916 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 AC010491.1-201ENST00000563101 2797 ntBASIC17.06■□□□□ 0.32
LIG3P49916 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.06■□□□□ 0.32
LIG3P49916 CICP14-201ENST00000629111 2732 ntBASIC17.06■□□□□ 0.32
LIG3P49916 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.06■□□□□ 0.32
LIG3P49916 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms