Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A5P29400 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL4A5P29400 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A5P29400 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A5P29400 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.99■□□□□ 0.63
COL4A5P29400 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
COL4A5P29400 AC020914.3-201ENST00000594712 304 ntBASIC18.98■□□□□ 0.63
COL4A5P29400 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL4A5P29400 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A5P29400 AP001094.4-201ENST00000579008 2176 ntBASIC18.98■□□□□ 0.63
COL4A5P29400 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL4A5P29400 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A5P29400 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
COL4A5P29400 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
COL4A5P29400 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL4A5P29400 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.98■□□□□ 0.63
COL4A5P29400 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A5P29400 APOA2-204ENST00000464492 530 ntTSL 3 BASIC18.98■□□□□ 0.63
COL4A5P29400 MIR4722-201ENST00000578292 60 ntBASIC18.98■□□□□ 0.63
COL4A5P29400 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC18.98■□□□□ 0.63
COL4A5P29400 MIR6727-201ENST00000620702 65 ntBASIC18.98■□□□□ 0.63
COL4A5P29400 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.98■□□□□ 0.63
COL4A5P29400 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL4A5P29400 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
COL4A5P29400 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 KRT8P35-201ENST00000483942 1338 ntBASIC18.97■□□□□ 0.63
COL4A5P29400 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.97■□□□□ 0.63
COL4A5P29400 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL4A5P29400 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.97■□□□□ 0.63
COL4A5P29400 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL4A5P29400 AC244452.3-201ENST00000636814 210 ntBASIC18.97■□□□□ 0.63
COL4A5P29400 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL4A5P29400 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A5P29400 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.97■□□□□ 0.63
COL4A5P29400 AC015818.8-201ENST00000587907 1519 ntBASIC18.97■□□□□ 0.63
COL4A5P29400 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL4A5P29400 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A5P29400 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A5P29400 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A5P29400 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A5P29400 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A5P29400 ACTBP8-201ENST00000403258 1108 ntBASIC18.96■□□□□ 0.63
COL4A5P29400 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A5P29400 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC18.96■□□□□ 0.63
COL4A5P29400 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC18.96■□□□□ 0.63
COL4A5P29400 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A5P29400 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.96■□□□□ 0.63
COL4A5P29400 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A5P29400 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A5P29400 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.96■□□□□ 0.63
COL4A5P29400 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A5P29400 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL4A5P29400 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.96■□□□□ 0.63
COL4A5P29400 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
COL4A5P29400 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A5P29400 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A5P29400 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 CSH2-202ENST00000345366 598 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A5P29400 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 NUS1P3-201ENST00000423502 862 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A5P29400 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A5P29400 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL4A5P29400 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 U62317.3-201ENST00000608319 855 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms