Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.23■□□□□ 0.03
COL5A1P20908 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 AC015910.1-201ENST00000579400 975 ntBASIC15.23■□□□□ 0.03
COL5A1P20908 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 AC008687.7-202ENST00000637404 953 ntBASIC15.23■□□□□ 0.03
COL5A1P20908 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL5A1P20908 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.23■□□□□ 0.03
COL5A1P20908 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
COL5A1P20908 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC15.22■□□□□ 0.03
COL5A1P20908 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 AC007969.1-201ENST00000433675 447 ntBASIC15.22■□□□□ 0.03
COL5A1P20908 AC026410.3-201ENST00000514280 936 ntBASIC15.22■□□□□ 0.03
COL5A1P20908 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.22■□□□□ 0.03
COL5A1P20908 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.22■□□□□ 0.03
COL5A1P20908 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL5A1P20908 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.22■□□□□ 0.03
COL5A1P20908 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.22■□□□□ 0.03
COL5A1P20908 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.22■□□□□ 0.03
COL5A1P20908 CALR4P-201ENST00000431943 946 ntBASIC15.22■□□□□ 0.03
COL5A1P20908 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
COL5A1P20908 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.22■□□□□ 0.03
COL5A1P20908 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
COL5A1P20908 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.22■□□□□ 0.03
COL5A1P20908 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.22■□□□□ 0.03
COL5A1P20908 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 MIR3615-201ENST00000581999 87 ntBASIC15.22■□□□□ 0.03
COL5A1P20908 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.22■□□□□ 0.03
COL5A1P20908 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL5A1P20908 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.22■□□□□ 0.03
COL5A1P20908 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.22■□□□□ 0.03
COL5A1P20908 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
COL5A1P20908 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.21■□□□□ 0.03
COL5A1P20908 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
COL5A1P20908 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL5A1P20908 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.21■□□□□ 0.03
COL5A1P20908 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.21■□□□□ 0.03
COL5A1P20908 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.21■□□□□ 0.03
COL5A1P20908 ALOX12P2-203ENST00000570921 1945 ntBASIC15.21■□□□□ 0.03
COL5A1P20908 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.21■□□□□ 0.03
COL5A1P20908 AC025279.2-201ENST00000569730 653 ntBASIC15.21■□□□□ 0.03
COL5A1P20908 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.21■□□□□ 0.03
COL5A1P20908 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.21■□□□□ 0.03
COL5A1P20908 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
COL5A1P20908 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 DRD5P1-201ENST00000456605 1438 ntBASIC15.21■□□□□ 0.03
COL5A1P20908 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL5A1P20908 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
COL5A1P20908 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL5A1P20908 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL5A1P20908 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.21■□□□□ 0.02
COL5A1P20908 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL5A1P20908 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.21■□□□□ 0.02
COL5A1P20908 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.2■□□□□ 0.02
COL5A1P20908 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
COL5A1P20908 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.2■□□□□ 0.02
COL5A1P20908 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 KRT8P13-201ENST00000463294 1010 ntBASIC15.2■□□□□ 0.02
COL5A1P20908 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL5A1P20908 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.2■□□□□ 0.02
COL5A1P20908 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms