Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TPM1P09493 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.88■□□□□ 0.45
TPM1P09493 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 SART3-203ENST00000546611 1184 ntBASIC17.88■□□□□ 0.45
TPM1P09493 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.88■□□□□ 0.45
TPM1P09493 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
TPM1P09493 AC008608.2-201ENST00000606089 416 ntBASIC17.88■□□□□ 0.45
TPM1P09493 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.88■□□□□ 0.45
TPM1P09493 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.88■□□□□ 0.45
TPM1P09493 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TPM1P09493 AP003680.1-201ENST00000598970 3660 ntBASIC17.88■□□□□ 0.45
TPM1P09493 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TPM1P09493 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TPM1P09493 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.88■□□□□ 0.45
TPM1P09493 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.88■□□□□ 0.45
TPM1P09493 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TPM1P09493 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.88■□□□□ 0.45
TPM1P09493 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.87■□□□□ 0.45
TPM1P09493 AC016027.1-202ENST00000607927 1699 ntBASIC17.87■□□□□ 0.45
TPM1P09493 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
TPM1P09493 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.87■□□□□ 0.45
TPM1P09493 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 LAGE3P1-201ENST00000425356 484 ntBASIC17.87■□□□□ 0.45
TPM1P09493 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.87■□□□□ 0.45
TPM1P09493 AL160237.2-201ENST00000556165 472 ntBASIC17.87■□□□□ 0.45
TPM1P09493 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.87■□□□□ 0.45
TPM1P09493 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.87■□□□□ 0.45
TPM1P09493 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
TPM1P09493 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TPM1P09493 AC092919.2-201ENST00000623631 1645 ntBASIC17.87■□□□□ 0.45
TPM1P09493 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TPM1P09493 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.86■□□□□ 0.45
TPM1P09493 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.86■□□□□ 0.45
TPM1P09493 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.86■□□□□ 0.45
TPM1P09493 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.86■□□□□ 0.45
TPM1P09493 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.86■□□□□ 0.45
TPM1P09493 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.86■□□□□ 0.45
TPM1P09493 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
TPM1P09493 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.86■□□□□ 0.45
TPM1P09493 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.86■□□□□ 0.45
TPM1P09493 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 AC012569.1-201ENST00000591191 1524 ntBASIC17.86■□□□□ 0.45
TPM1P09493 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TPM1P09493 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.86■□□□□ 0.45
TPM1P09493 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms