Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
HMGB1P09429 KRT18P32-201ENST00000424695 1287 ntBASIC19.04■□□□□ 0.64
HMGB1P09429 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.04■□□□□ 0.64
HMGB1P09429 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB1P09429 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB1P09429 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.04■□□□□ 0.64
HMGB1P09429 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB1P09429 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.04■□□□□ 0.64
HMGB1P09429 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
HMGB1P09429 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
HMGB1P09429 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB1P09429 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB1P09429 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB1P09429 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.04■□□□□ 0.64
HMGB1P09429 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
HMGB1P09429 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.03■□□□□ 0.64
HMGB1P09429 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.03■□□□□ 0.64
HMGB1P09429 ALG1L8P-201ENST00000533887 760 ntBASIC19.03■□□□□ 0.64
HMGB1P09429 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.03■□□□□ 0.64
HMGB1P09429 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
HMGB1P09429 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB1P09429 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB1P09429 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.02■□□□□ 0.64
HMGB1P09429 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HMGB1P09429 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 AC211486.1-202ENST00000416371 468 ntBASIC19.02■□□□□ 0.64
HMGB1P09429 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.02■□□□□ 0.64
HMGB1P09429 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 AC211476.1-201ENST00000503899 468 ntBASIC19.02■□□□□ 0.64
HMGB1P09429 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.02■□□□□ 0.64
HMGB1P09429 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGB1P09429 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
HMGB1P09429 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB1P09429 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HMGB1P09429 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.02■□□□□ 0.63
HMGB1P09429 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HMGB1P09429 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HMGB1P09429 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.02■□□□□ 0.63
HMGB1P09429 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.02■□□□□ 0.63
HMGB1P09429 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
HMGB1P09429 BNIP3P1-202ENST00000550043 1585 ntBASIC19.02■□□□□ 0.63
HMGB1P09429 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB1P09429 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HMGB1P09429 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms