Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A1P02462 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A1P02462 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A1P02462 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A1P02462 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A1P02462 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
COL4A1P02462 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A1P02462 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A1P02462 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A1P02462 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A1P02462 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A1P02462 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A1P02462 AL590640.2-201ENST00000457038 527 ntBASIC19.38■□□□□ 0.69
COL4A1P02462 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 MIR4313-201ENST00000580760 101 ntBASIC19.38■□□□□ 0.69
COL4A1P02462 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A1P02462 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.38■□□□□ 0.69
COL4A1P02462 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A1P02462 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A1P02462 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A1P02462 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
COL4A1P02462 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.37■□□□□ 0.69
COL4A1P02462 FLII-221ENST00000578558 2377 ntTSL 5 BASIC19.37■□□□□ 0.69
COL4A1P02462 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.37■□□□□ 0.69
COL4A1P02462 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.37■□□□□ 0.69
COL4A1P02462 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.37■□□□□ 0.69
COL4A1P02462 ACTBP11-201ENST00000436287 1126 ntBASIC19.37■□□□□ 0.69
COL4A1P02462 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 GAPDHP40-201ENST00000505218 1006 ntBASIC19.37■□□□□ 0.69
COL4A1P02462 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
COL4A1P02462 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 AC022188.1-201ENST00000620960 1664 ntBASIC19.37■□□□□ 0.69
COL4A1P02462 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
COL4A1P02462 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 MTHFR-217ENST00000641820 1569 ntBASIC19.37■□□□□ 0.69
COL4A1P02462 TUBB1P2-201ENST00000422712 1306 ntBASIC19.37■□□□□ 0.69
COL4A1P02462 TUBB1P1-201ENST00000503144 1300 ntBASIC19.37■□□□□ 0.69
COL4A1P02462 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A1P02462 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.36■□□□□ 0.69
COL4A1P02462 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.36■□□□□ 0.69
COL4A1P02462 UBL5-208ENST00000593087 320 ntTSL 3 BASIC19.36■□□□□ 0.69
COL4A1P02462 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.36■□□□□ 0.69
COL4A1P02462 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.36■□□□□ 0.69
COL4A1P02462 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL4A1P02462 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
COL4A1P02462 RNU1-114P-201ENST00000365297 166 ntBASIC19.36■□□□□ 0.69
COL4A1P02462 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
COL4A1P02462 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
COL4A1P02462 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.36■□□□□ 0.69
COL4A1P02462 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 MIR6869-201ENST00000619434 62 ntBASIC19.36■□□□□ 0.69
COL4A1P02462 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A1P02462 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A1P02462 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.35■□□□□ 0.69
COL4A1P02462 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A1P02462 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A1P02462 PCDH8P1-201ENST00000428983 2773 ntBASIC19.35■□□□□ 0.69
COL4A1P02462 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A1P02462 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms