Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
COL2A1P02458 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.56■□□□□ 0.56
COL2A1P02458 AC099336.1-201ENST00000417053 1171 ntBASIC18.56■□□□□ 0.56
COL2A1P02458 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC18.56■□□□□ 0.56
COL2A1P02458 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.56■□□□□ 0.56
COL2A1P02458 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.56■□□□□ 0.56
COL2A1P02458 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
COL2A1P02458 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL2A1P02458 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.55■□□□□ 0.56
COL2A1P02458 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.55■□□□□ 0.56
COL2A1P02458 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL2A1P02458 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.55■□□□□ 0.56
COL2A1P02458 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.55■□□□□ 0.56
COL2A1P02458 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
COL2A1P02458 AC092658.1-201ENST00000505836 891 ntBASIC18.55■□□□□ 0.56
COL2A1P02458 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.55■□□□□ 0.56
COL2A1P02458 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.55■□□□□ 0.56
COL2A1P02458 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.55■□□□□ 0.56
COL2A1P02458 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.55■□□□□ 0.56
COL2A1P02458 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.55■□□□□ 0.56
COL2A1P02458 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL2A1P02458 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.54■□□□□ 0.56
COL2A1P02458 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.54■□□□□ 0.56
COL2A1P02458 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.54■□□□□ 0.56
COL2A1P02458 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.54■□□□□ 0.56
COL2A1P02458 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.54■□□□□ 0.56
COL2A1P02458 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL2A1P02458 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.54■□□□□ 0.56
COL2A1P02458 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.54■□□□□ 0.56
COL2A1P02458 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.54■□□□□ 0.56
COL2A1P02458 MSTO2P-201ENST00000314835 1709 ntBASIC18.54■□□□□ 0.56
COL2A1P02458 AC069224.1-201ENST00000566372 1715 ntBASIC18.54■□□□□ 0.56
COL2A1P02458 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL2A1P02458 AC093525.8-201ENST00000624099 1342 ntBASIC18.54■□□□□ 0.56
COL2A1P02458 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.54■□□□□ 0.56
COL2A1P02458 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL2A1P02458 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.54■□□□□ 0.56
COL2A1P02458 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 AC018892.3-201ENST00000623986 2499 ntBASIC18.53■□□□□ 0.56
COL2A1P02458 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms