Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 AL139010.1-201ENST00000454878 894 ntBASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 AC104596.2-201ENST00000512793 793 ntBASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 AC068587.3-201ENST00000526613 355 ntBASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 SUOX-214ENST00000551841 906 ntTSL 3 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC30.39■■■□□ 2.46
SHROOM4Q9ULL8 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC30.39■■■□□ 2.45
SHROOM4Q9ULL8 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.45
SHROOM4Q9ULL8 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
SHROOM4Q9ULL8 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 LOX-206ENST00000639739 1626 ntTSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 YBX1P6-201ENST00000442962 1002 ntBASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AC036164.1-201ENST00000570544 333 ntBASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 BRI3BPP1-201ENST00000594224 787 ntBASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
SHROOM4Q9ULL8 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 AC026471.1-201ENST00000564629 3026 ntBASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 AGER-203ENST00000375065 665 ntTSL 2 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 APOA1-205ENST00000375329 927 ntTSL 2 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 AC079316.1-201ENST00000548397 411 ntBASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHROOM4Q9ULL8 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 AC015967.2-201ENST00000624092 234 ntBASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 AC006435.4-201ENST00000625037 234 ntBASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 AL356737.1-201ENST00000634391 234 ntBASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC30.36■■■□□ 2.45
SHROOM4Q9ULL8 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms