Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLCF1Q9UBD9 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AC015922.1-201ENST00000421102 1152 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AC114501.2-201ENST00000439631 535 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 EEF1DP4-201ENST00000446006 880 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AC004233.3-201ENST00000607794 1269 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AC007326.2-201ENST00000624224 7579 ntBASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLCF1Q9UBD9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 AL691432.1-201ENST00000596308 1422 ntBASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
CLCF1Q9UBD9 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.33□□□□□ -0.12
CLCF1Q9UBD9 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms