Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 ME2P1-201ENST00000426028 1970 ntBASIC17.94■□□□□ 0.46
VTA1Q9NP79 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 HAUS4P1-201ENST00000406739 1145 ntBASIC17.94■□□□□ 0.46
VTA1Q9NP79 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 KRT43P-201ENST00000434019 910 ntBASIC17.94■□□□□ 0.46
VTA1Q9NP79 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 AC119751.2-201ENST00000504529 210 ntBASIC17.94■□□□□ 0.46
VTA1Q9NP79 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.94■□□□□ 0.46
VTA1Q9NP79 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 COX11-210ENST00000639671 696 ntBASIC17.94■□□□□ 0.46
VTA1Q9NP79 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VTA1Q9NP79 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VTA1Q9NP79 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 PHKG1P2-201ENST00000457537 863 ntBASIC17.93■□□□□ 0.46
VTA1Q9NP79 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SLED1-202ENST00000512051 380 ntBASIC17.93■□□□□ 0.46
VTA1Q9NP79 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 MIR6799-201ENST00000620297 69 ntBASIC17.93■□□□□ 0.46
VTA1Q9NP79 CU634019.7-201ENST00000624153 1185 ntBASIC17.93■□□□□ 0.46
VTA1Q9NP79 FP236241.2-201ENST00000624906 1185 ntBASIC17.93■□□□□ 0.46
VTA1Q9NP79 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VTA1Q9NP79 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
VTA1Q9NP79 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.92■□□□□ 0.46
VTA1Q9NP79 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
VTA1Q9NP79 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VTA1Q9NP79 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms