Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 AC087163.2-201ENST00000457299 853 ntBASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 AP001350.2-201ENST00000625104 1094 ntBASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.02□□□□□ -0.17
CHMP1AQ9HD42 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 GGT4P-201ENST00000623672 1708 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AC131009.4-201ENST00000624048 1740 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 PAWRP1-201ENST00000451083 565 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SCARNA2-201ENST00000458748 420 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 MIR3652-201ENST00000579335 131 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AC091167.2-201ENST00000579581 588 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 MTDHP4-201ENST00000600287 670 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AL121772.3-201ENST00000610840 674 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AF228730.7-201ENST00000641842 219 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 PCGF3-213ENST00000620529 1899 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 AL512652.2-201ENST00000625156 1716 ntBASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CHMP1AQ9HD42 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms