Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
CDX2Q99626 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CDX2Q99626 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 LINC02012-201ENST00000608206 1725 ntBASIC16.56■□□□□ 0.24
CDX2Q99626 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.56■□□□□ 0.24
CDX2Q99626 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CDX2Q99626 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 PCDHB17P-201ENST00000539533 2393 ntBASIC16.56■□□□□ 0.24
CDX2Q99626 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.56■□□□□ 0.24
CDX2Q99626 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.56■□□□□ 0.24
CDX2Q99626 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.56■□□□□ 0.24
CDX2Q99626 AC078991.1-201ENST00000437297 610 ntBASIC16.56■□□□□ 0.24
CDX2Q99626 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.56■□□□□ 0.24
CDX2Q99626 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.56■□□□□ 0.24
CDX2Q99626 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CDX2Q99626 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.56■□□□□ 0.24
CDX2Q99626 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.56■□□□□ 0.24
CDX2Q99626 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.56■□□□□ 0.24
CDX2Q99626 AC020922.3-201ENST00000595064 547 ntBASIC16.56■□□□□ 0.24
CDX2Q99626 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.56■□□□□ 0.24
CDX2Q99626 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDX2Q99626 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.56■□□□□ 0.24
CDX2Q99626 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CDX2Q99626 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 AL391256.1-201ENST00000443260 1855 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 DPM3-202ENST00000368399 517 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC16.55■□□□□ 0.24
CDX2Q99626 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.55■□□□□ 0.24
CDX2Q99626 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 FAU-202ENST00000434372 533 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 AC006335.1-201ENST00000445200 547 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 KRT18P43-201ENST00000469825 1281 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 AL157792.1-201ENST00000488281 530 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.55■□□□□ 0.24
CDX2Q99626 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CDX2Q99626 AC006453.1-201ENST00000636037 1257 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 AC090164.3-201ENST00000610780 2143 ntBASIC16.55■□□□□ 0.24
CDX2Q99626 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX2Q99626 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX2Q99626 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.55■□□□□ 0.24
CDX2Q99626 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 GGT4P-201ENST00000623672 1708 ntBASIC16.54■□□□□ 0.24
CDX2Q99626 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX2Q99626 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.54■□□□□ 0.24
CDX2Q99626 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CDX2Q99626 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CDX2Q99626 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CDX2Q99626 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CDX2Q99626 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX2Q99626 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.54■□□□□ 0.24
CDX2Q99626 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.54■□□□□ 0.24
CDX2Q99626 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CDX2Q99626 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms